Publications List

Pia-Amata Leimbacher, Samuel E.Jones, Ann-Marie K.Shorrocks, Marade Marco Zompit, Matthew Day, Jordy Blaauwendraad, Diana Bundschuh, Sarah Bonham, Roman Fischer, Daniel Fink, Benedikt M.Kessler, Antony W.Oliver, Laurence H.Pearl, Andrew N.Blackford, ManuelStucki (2019)

Mol Cell. 2019 May 2; 74(3): 571-583.e8

King, Helen A., El-Sharif, Hazim F., Matia-González, Ana M., Iadevaia, Valentina, Fowotade, Adeola, Reddy, Subrayal M and Gerber, André P. (2017)

Scientific Reports, 7 (1). ISSN 2045-2322

Tim Schneider, Lee-Hsueh Hung, Silke Schreiner, Stefan Starke, Heinrich Eckhof , Oliver Rossbach, Stefan Reich, Jan Medenbach, and Albrecht Bindereif. (2016)

Nature Sci Rep. 2016; 6: 31313.

Alexander R. Langley, Stefan Graf, James C. Smith, and Torsten Krude. (2016)

Nucleic Acids Research, 2016 doi: 10.1093/nar/gkw760

Stefan Reber, Jolanda Stettler1, Giuseppe Filosa, Martino Colombo Daniel Jutzi, Silvia C Lenzken, Christoph Schweingruber, Rémy Bruggmann, Angela Bachi, Silvia ML Barabino, Oliver Mühlemann & Marc-David Ruepp (2016)

The EMBO Journal 35: 1504–1521

Angulo J, Ulryck N, Deforges J, Chamond N, Lopez-Lastra M, Masquida B, Sargueil B (2016)

Nucleic Acids Res 44: 1309-1325

Vivien Berthelot, Gildas Mouta-Cardoso, Nadia Hégarat, François Guillonneau, Jean-Christophe François, Carine Giovannangeli, Danièle Praseuth, Filippo Rusconi. (2016)

Nucleic Acids Research, Volume 44, Issue 10, 2 June 2016, Pages 4721–4733

Katarzyna Dorota Raczynska Marc-David Ruepp Aleksandra Brzek Stefan Reber Valentina Romeo Barbara Rindlisbacher Manfred Heller Zofia Szweykowska-Kulinska Artur Jarmolowski Daniel Schümperli. (2015)

Nucleic Acids Research, Volume 43, Issue 20, 16 November 2015, Pages 9711–9728

Andrew N. Blackford, Jadwiga Nieminuszczy, Rebekka A. Schwab, Yaron Galanty, Stephen P. Jackson, and Wojciech Niedzwiedz (2015)

Mol Cell. 2015 Mar 19; 57(6): 1133–1141

Takashi Ochi, Andrew N. Blackford, Julia Coates, Satpal Jhujh, Shahid Mehmood, Naoka Tamura, Jon Travers, Qian Wu, Viji M. Draviam, Carol V. Robinson, Tom L. Blundell, and Stephen P. Jackson (2015)

Science. 2015 Jan 9; 347(6218): 185–188.

JiwenYang, Lee-HsuehHung, ThomasLicht, SawaKostin, MarioLooso, EkaterinaKhrameeva, AlbrechtBindereif, AndreSchneider, ThomasBraun. (2014)

Developmental Cell Volume 31, Issue 1, 13 October 2014, Pages 87-99

APC/CCdh1 controls CtIP stability during the cell cycle and in response to DNA damage

Lorenzo Lafranchi, Harmen R de Boer, Elisabeth GE de Vries, Shao-En Ong, Alessandro A Sartori and Marcel ATM van Vugt. (2014)

EMBO J. 2014 Dec 1; 33(23): 2860–2879.

40S recruitment in the absence of eIF4G/4A by EMCV IRES refines the model for translation initiation on the archetype of Type II IRESs

Chamond N, Deforges J, Ulryck N, Sargueil B (2014)

Nucleic Acids Res 42: 10373-10384

A novel tissue-specific alternatively spliced form of the A-to-I RNA editing enzyme ADAR2

Agranat, L., Sperling, J. and Sperling, R. (2010)

RNA Biology 7, 1-10

The hierarchy of exon-junction complex assembly by the spliceosome explains key features of mammalian nonsense-mediated mRNA decay

Gehring, N.H., Lamprinaki, S., Hentze, M. and Kulozik, A.E. (2009)

Plos Biology 7 (5) e 1000120

Disassembly of exon junction complexes by PYM

Gehring, N.H., Lamprinaki, S., Kulozik, A.E. and Hentze, M. (2009)

Cell 137, 536-548

Dia 1 and IQGAP1 interact in cell migration and phagocytic cup formation

Brandt, D., Marion, S., Griffiths, G., Watanabe, T., Kaibuchi, K. and Grosse, R. (2007)

Journal of Cell Biology 178, 193-200

Measurement and Control of viable cell density in a mammalian cell bioprocessing facility: Validation of the software

Sergeant,D., Moser, M., and Carvell, J. (2007)

Poster presented at the 20th ESACT meeting Dresden, 17-20th June 2007

Chemica proteomic profiles of the BCR-ABL inhibitors imatinib, nilotinib, and desatinib reveal novel kinase and non kinase targets

Rix,V., Hantschel,O., Dürnberger, G.,Lily,L.,Rix,R., Planyavsky,M., Fernbach,N.V., Kaupe,I.,Bennett,K.L., Valent,P., Colinge,J., Köcher,T. and Superti-Furga,G. (2007)

Blood 110,4055-4063

The Rheumatoid Arthritis-Associated Autoantigen hnRNP-A2 (RA33) is a Major Stimulation of Autoimmunity in Rats with Pristane-induced Arthriti

Hoffmann,M.H., Tuncel,J., Shriner,K., Tohidast-Akrad, M.Türk;B., Pinol-Roma,S., Serre, G., Schett,G., Smolen,J ;S., Holmdahl,R. and Steiner,G. (2007)

The Journal of Immunology 179, 7568-7576

Structural model of full-lengh human Ku70-Ku80 heterodimer and its recognition of DNA and DNA-PKcs

Rivera-Calzada, A., Spagnolo, L., Laurence H., P., Llorca, O. (2007)

EMBO reports 8, 56-62

Controlling a constant level of viable biomass in a perfused cytostat using radio-frequency impedance

Sergeant, D., Vereecke, J., Moser, M., Carvell, J.P., Miller, A.O.A., Poppleton, J.

Poster presented at Cell Engineering Conference, April ,2006.

Micro-scale open-tube capillary separations of functional proteins

Hanna, C., Gjerde, D., Nguyen, L., Dickman, M., Brown, P. and Hornby, D. (2006)

Analytical Biochemistry 350, 128-137.

The Polycomb group protein EZH2 directly controls DNA methylation

Viré, E., Brenner, C., Deplus, R., Blanchon, L., Fraga, M., Didelot, C., Morey, L., Van Eynde, A., Bernard, D., Vanderwinden, J-M., Bollen, M., Esteller, M., Di Croce, L., de Launoit, Y., and Fuks, F. (2006)

Nature 439, 871-874.

The methyl-CpG-binding protein MECP2 is required for prostate cancer cell growth

Bernard, D., Gil, J., Dumont, P., Rizzo, S., Monté, D., Quatannens, B., Hudson, D., Visakorpi, T., Fuks, F. and de Launoit, Y.(2006)

Oncogene 25, 1358–1366.

Viral oncoproteins target the DNA methyltransferases

Burgers, W.A., Blanchon, L., Pradhan, S., de Launoit, Y., Kouzarides, T., Fuks, F. (2006)

Oncogene

Biochemical and NMR study on the competition between proteins SC35, SRp40 and hnRNP A1 at the HIV-1 Tat exon 2 splicing site

Hallay, H., Locker, N., Ayadi, L., Ropers, D., Guittet, E. and Branlant, C. (2006)

J. Biol. Chem., Vol. 281, Issue 48, 37159-37174

Study of RNA-Protein interactions and RNA structure in RNP particules

Marchand, V., Mougin, A., Mereau, A. and Branlant, C. (2005)

In: Westhof, Bindereif, Schön, Hartmann, (eds) Handbook of RNA Biochemistry, Chapter 11, 172-204, Wiley-VCH

Myc represses transcription through recruitment of DNA methyltransferase corepressor

Brenner, C., Deplus, R., Didelot, C., Loriot, A., Viré, E., De Smet, C., Gutierrez, A., Danovi, D., Bernard, D., Boon, T., Pelicci, P.G., Amati, B., Kouzarides, T., de Launoit, Y., Di Croce, L. and Fuks, F. (2005)

EMBO Journal 24, 336-346.

U1-like snRNAs lacking complementarity to canonical 5’splice sites

Kyriakopoulou, C., Larsson, P., Liu, L., Schuster, J., Söderbom, F., Kvisebom, L., Virtanen, A. (2005)

RNA (submitted for publication).

Culture of porcine neonate pancreatic cells onto two-dimensional microsupport; diabetes cell therapy with reconstituted organoids

Henry, C., Meda, P., Dasnois, L., Lebtahi, K., Malaisse, W.J., Remacle, C. and Miller, A.O.A. (2004)

Diabetes Research 38, 33-45.

Differential effects of the SR proteins 9G8, SC35, ASF/SF2 and SRp40 on the utilization of the A1 to A5 splicing sites of HIV-1 RNA

Ropers, D., Ayadi, L., Gattoni, R., Jacquenet, S., Damier, L., Branlant, C. and Stévenin, J. (2004)

J. Biol. Chem., 279, 29963-29973

The FHA domain protein SNIP1 is a regulator of the cell cycle and cyclin D1 expression

Roche,K.C., Wiechens,N., Owen-Hughes,T and Perkins, N.D. (2004)

Oncogene 23, 8185-8195

Three-dimensional structure of the native spliceosome by cryo-electron microscopy

Azubel, M., Wolf, S.G., Sperling, J. and Sperling, R. (2004)

Molec. Cell. 15, 833-839

Dnmt3L is a transcriptional repressor that recruits histone deacetylase

Deplus, R., Brenner, C., Burgers, W.A., Putmans, P., Kouzarides, T., de Launoit, Y., Fuks, F. (2002)

Nucleic Acid Res. 30, n°17, 3831-3838.

A Second Exon Splicing Silencer within Human Immunodeficiency Virus Type 1 tat Exon 2 Represses Splicing of Tat mRNA and Binds Protein hnRNP H

Jacquenet, S., Méreau, A., Bilodeau, P.S., Damier, L., Martin Stoltzfus, C. and Branlant, C. (2001)

J. Biol. Chem., 276, No 44, Issue of November 2, 40464-40475

SF2/ASF binds to a splicing enhancer in the third HIV-1 tat exon and stimulates U2AF binding independently of the RS domain

independently of the RS domainTange, T.O., Kjems, J. (2001)

J.Mol.Biol. 312, 649-662.

The HnRNP A1 protein regulates HIV-1 tat splicing via a novel intron silencer element

Tange, T.O., Damgaard, C.K., Guth, S., Valcárcel, J., Kjems, J. (2001)

EMBO Journal 20, 5748-5758.

Characterization of the heparin binding site of the mycobacterial Heparin-binding hemagglutinin adhesin

Pethe, K., Aumercier, M., Fort, E., Gatot, C. and Menozzi, F.D. (2000)

J.Biol.Chem 275,1

An exonic splicing silencer in the testes-specific DNA ligase III B exon

Chew, S.L., Baginsky, L., Eperon, I.C. (2000)

Nucleic Acid Res. 28, 402-410.

Isolation and identification of the third subunit of mammalian DNA polymerase d by PCNA-affinity chromatography of Mouse FM3A cell extracts

Hughes, P., Tratner, I., Ducoux, M., Piard, K., Baldacci, G. (1999)

Nucleic Acids Res. 27, 2108-2114.

Cleavage and inactivation of ATM during apoptosis.

Smith, G.C., d’Adda di Fagagna, F., Lakin, N.D. and Jackson, S.P. (1999)

Molec. Cell. Biol. 19, 6076-6084

Purification and DNA binding properties of the ataxia-telangiectasia gene product ATM

Smith, G.C., Cary, R.B., Lakin, N.D., Hann, B.C., Teo, S._H., Chen, D.J. and Jackson, S.P. (1999)

Proc. Natl. Acad. Sci. USA 96, 11134-11139.

The ataxia-telangiectasia related protein ATR mediates DNA-dependent phosphorylation of P53

Lakin, N.D., Hann, B.C. and Jackson, S.P. (1999)

Oncogene 68, 3989-3995

Competitive and non-competitive inhibition of the DNA-dependent protein kinase

Izzard, R.A., Jackson, S.P. and Smith, G.C.M. (1999).

Cancer Res. 59, 2581-2586.

Mapping of protein-protein interactions within the DNA-dependent protein kinase complex

Gell, D. and Jackson, S. P. (1999)

.Nucl. Ac. Res. 27, 3494-3502.

Purification and depletion of RNP particles by antisense affinity chromatography

Blencowe, B.J. and Lamond, A.I; (1999).

Meth. in Molecular Biology 118.

p53 is a general repressor of RNA polymerase III transcription

Cairns, C.A. and White, R.J. (1998)

EMBO Journal 17, 3112-3123.

Retinoblastoma protein recruits histone deacetylase to repress transcription

Brehm, A., Miska, E.A., MacCance, D.J., Reid, J.L., Bannister, A.J., Kouzarides, T. (1998).

Nature 391, 591-601.

Purification and characterisation of p99, a nuclear modulator of protein phosphatase 1 activity

Kreivi, J.P., Trinkle-Mulcahy, L., Lyon, C.E., Morrice, N.A., Cohen, P., Lamond, A.I. (1997).

FEBS Letters 420, 57­62.

The human U4/U6 SnRNP contains 60 and 90 kD proteins that are structurally homologous to the yeast splicing factors Prp4p and Prp3p



Lauber, J., Plessel, G., Prehn, S., Will, C.L., Fabrizio, P., Grôning, K., Lane, W.S. and Lührmann, R. (1997).

RNA. 3, 926-941

An evolutionary conserved U5 SnRNP-specific protein is a GTP-binding factor closely related to the ribosomal translocase EF-2

Fabrizio, P., Laggerbauer, B., Lauber, J., Lane, W.S. and Lührmann, R. (1997).

EMBO Journal 16, 4092-4106.

The D1-A2 and D2-A2 pairs of splice sites from human immunodeficiency virus Type 1 are highly efficient in vitro, in spite of an unusual branch site

Damier, L., Domenjoud, L. and Branlant, C. (1997).

Biochem. Biophys. Res. Comm. 237, 182-187.

In vitro reconstitution of mammalian U1 SnRNPs active in splicing : the U1:C protein enhances the formation of early (E) spliceosomal complexes

Will, C.L., Rümpler, S., Gunnewiek, J.K., Van Venrooij, W. and Lührmann, R. (1996)

Nucl. Ac. Res. 24, 4614-4623.

The HeLa 200 kDa U5 SnRNP-specific protein and its homologue in Saccharomyces cerevisiae are members of the DEXH-box protein family of putative RNA helicases

Lauber, J., Fabrizio, P., Teigelkamp, S., Lane, W.S., Hartmann, E. and Lührmann, R. (1996)



EMBO Journal 15, 4001-4015.

Identification of an RNA-dependent ATPase activity in mammalian U5 SnRNPs

Laggerbauer, B., Lauber, J. and Lührmann, R. (1996)

Nucl. Ac. Res. 24, 868-875.

A chemiluminescent microplate assay to detect DNA damage induced by genotoxic treatments

Salles, B., Provot, C., Calsou, P., Hennebelle, J., Gosset, I. and Fournié, G.J. (1995)

Analytical Biochemistry 232, 37-42.

Identification of hnRNP P2as TLS/FUS using electrospray mass spectrometry

Calvio, C., Neubauer, G., Mann, M. and Lamond, A.I. (1995)

RNA 1, 724-733.

R-Tropomyosin pre-mRNA folding around a muscle-specific exon interferes with several steps of spliceosome assembly

Sirand-Pugnet, P., Durosay, P., Clouet d’Orval, B., Brody, E., Marie, J. (1995)

J. Mol. Biol. 251, 591-602.

Human mitochondrial tRNA processing

Rossmanith, W., Tullo, A., Potuschak, T., Karwan, R. (1995)

J. Biol. Chem. 270, 12885-12891.

In vitro reconstitution of mammalian U2 and U5 snRNPs active in splicing : Sm proteins are essential for the formation of functional U2 and U5 SnRNPs

Ségault, V., Will, C.L., Sproat, B.S. and Lührmann, R. (1995)

MBO Journal 14, 7010-4021.

m3G cap hypermethylation of U1 small nuclear ribonucleoprotein (SnRNP) in vitro: evidence that the U1 small nuclear RNA-(guanosine-N2)­methyltransferase is a non-SnRNP cytoplasmic protein that requires a binding site on the Sm core domain

Plessel, G., Fischer, U. and Lührmann, R, (1994)

Molecular and Cellular Biology 14, 4160-4172.

A 69 kD protein that associates reversibly with the Sm core domain of several spliceosomal SnRNP species

Hackl, W., Fischer, V. and Lührmann, R. (1994)

J. Cell Biol. 124, 261-272.

Ser/Thr-specific protein phosphatases are required for both catalytic steps of pre-mRNA splicing

Mermoud, J.E., Cohen, P. and Lamond, A.I. (1992)

Nucl. Ac. Res. 20, 5263-5269.

Antisense probes targeted to an internal domain in U2 snRNP specifically inhibit the second step of pre-mRNA splicing

Barabino, S.M.L., Sproat, B.S. and Lamond, A.I. (1992)

Nucl. Ac. Res. 20, 4457-4464.

Antisense probes containing 2-aminoadenosine allow efficient depletion of U5 snRNP from HeLa splicing extracts

Lamm, G.M., Blencowe, B.J., Sproat, B.S., Iribarren, A.M., Ryder, U. and Lamond, A.I. (1991)

Nucl. Ac. Res. 19, 3193-3198.

The DNA binding subunit of NF-KB is identical to factor KBF, and homologous to the rel oncogene product

Kleren, M., Blank, V., Logest, F., Vandekerckhove, J., Lottspeich, F., Le Ball, O., Urban, M.B., Kourilsky, Ph., Bauerle, P.A. and Israel, A; (1990)

Cell 62, 1007-1018.

Sequence-specific affinity selection of mammalian splicing complexes

Ryder, U., Sproat, B.S. and Lamond, A.I. (1990)

Nucl. Ac. Res. 18, 7373-7379.

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